Publications

Sarah Gurev, Noor Youssef, Navami Jain, Debora S Marks (2024). Alignment-based and protein foundation models for viral evolution, vaccines and vectors. Neurips Workshop on AI for New Drug Modalities.

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Sarah Gurev, Noor Youssef, Hannah Pierce-Hoffman, Debora S Marks (2024). Future-proof vaccine design with a generative model of antibody cross-reactivity. ICLR Workshop on Generative and Experimental Perspectives for Biomolecular Design.

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Noor Youssef, Sarah Gurev, Fadi Ghantous, Kelly Brock, Javier Jaimes, Nicole Thadani, Ann Dauphin, Amy Sherman, Leonid Yurkovetsky, Daria Soto, Ralph Estanboulieh, Ben Kotzen, Pascal Notin, Aaron Kollasch, Alexander Cohen, Sandra Dross, Jesse Erasmus, Deborah Fuller, Pamela Bjorkman, Jacob Lemieux, Jeremy Luban, Michael Seaman, Debora Marks (2024). Protein design for evaluating vaccines against future viral variation. BioRxiv.

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Nicole N Thadani, Sarah Gurev, Pascal Notin, Noor Youssef, Nathan J Rollins, Daniel Ritter, Chris Sander, Yarin Gal, Debora S Marks (2023). Learning from prepandemic data to forecast viral escape. Nature.

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Ada Shaw, Hansen B Spinner, June Shin, Sarah Gurev, Nathan Rollins, Debora S Marks (2023). Removing bias in sequence models of protein fitness. BioRxiv.

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Miles Linde, Amy Fan, Thomas Kohnke, Aaron Trotman-Grant, Sarah Gurev, Paul Phan, Feifei Zhao, Naomi Haddock, Kevin Nuno, Eric Gars, Melissa Stafford, Payton Marshall, Christopher Dove, Ian Linde, Niklas Landberg, Lindsay Miller, Robbie Majzner, Tian Yi Zhang, Ravindra Majeti (2023). Reprogramming Cancer into Antigen-Presenting Cells as a Novel Immunotherapy. Cancer Discovery.

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